Zuoshuang Xiang, Thomas Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf , George W. Jourdian, Yongqun He. VIOLIN: Vaccine Investigation and Online Information Network. Nucleic Acids Research. 2008, Vol. 36, Database issue D923-D928. [NAR link] [PMID: 18025042].

Zuoshuang Xiang, Rebecca M. Minter, Xiaoming Bi, Peter Woolf, Yongqun He. miniTUBA: medical inference by network integration of temporal data using Bayesian analysis. Bioinformatics. 2007 Sep 15;23(18):2423-32. PMID: 17644819.

Zuoshuang Xiang, Yuying Tian, Yongqun He. PHIDIAS: a pathogen-host interaction data integration and analysis system. Genome Biology. 2007 Jul 30;8(7):R150. PMID: 17663773.

Zuoshuang Xiang, Zhaohui Steve Qin and Yongqun He. CRCView: A web server for analyzing and visualizing microarray gene expression data using model-based clustering. Bioinformatics. 2007 Jul 15;23(14):1843-5. PMID: 17485426.

Yongqun He, Howard G. Rush, Rachel S. Liepman, Zuoshuang Xiang, Lesley A. Colby. Pathobiology and management of laboratory rodents administered CDC Category A agents. Comparative Medicine. 2007. Feb;57(1):18-32. PMID: 17348288.

Yongqun He, Sherry Reichow, Sheela Ramamoorthy, Xicheng Ding, Raju Lathigra, Johanna C. Craig, Bruno W.S. Sobral, Gerhardt G. Schurig, Nammalwar Sriranganathan, and Stephen M. Boyle. Brucella melitensis triggers time-dependent modulation of apoptosis and down-regulation of mitochondria-associated gene expression in mouse macrophages. Infection and Immunity. 2006 Sep;74(9):5035-46. PMID: 16926395.

Zuoshuang Xiang, Wenjie Zheng and Yongqun He. BBP: Brucella genome annotation with literature mining and curation. BMC Bioinformatics. 2006 Jul 16;7(1):347. (Highly accessed). PMID: 16842628.

YVladyslava G Ratushna, David M Sturgill, Sheela Ramamoorthy, Sherry A Reichow, Yongqun He, Raju Lathigra, Nammalwar Sriranganathan, Shirley M Halling, Stephen M Boyle and Cynthia J Gibas. Molecular targets for rapid identification of Brucella spp. BMC Microbiol. 2006 Feb 22;6:13. PMID: 16504063.

Yongqun He, Richard R. Vines, Alice R. Wattam, Georgiy V. Abramochkin, Allan W. Dickerman, J. Dana Eckart, and Bruno W. S. Sobral. PIML: The Pathogen Information Markup Language. Bioinformatics. 2005;21(1):116-21. PMID: 15297293.

Raju Lathigra, Yongqun He, Richard R. Vines, Eric K. Nordberg, Bruno W.S. Sobral. 2005. A biologist's view of systems integration for system biology - the Pathogen Portal Project (Chapter 13). In: J. Perry Gustafson, Randy Shoemaker and John W. Snape, editors. Genome Exploitation: Data Mining the Genome (ISBN: 0-387-24123-X). Springer, New York, NY. p 183-196.

Ramesh Vemulapalli, Yongqun He, N. Sriranganathan, S. M. Boyle, G. G. Schurig. Brucella abortus RB51: Enhancing vaccine efficacy and developing multivalent vaccines. Veterinary Microbiology, 2002, 2406: 1-12. PMID: 12414168.

Yongqun He, Ramesh Vemulapalli, Gerhardt G. Schurig. Recombinant Ochrobactrum anthropi expressing Brucella Cu/Zn-superoxide dismutase protects mice against B. abortus infection only after switching immune responses to Th1 type. Infection and Immunity, 2002, 70(5): 2535-2543. PMID: 11953393.

Yongqun He, Ramesh Vemulapalli, Ahmet Zeytun, Gerhardt Schurig. Induction of specific cytotoxic lymphocytes in mice vaccinated with Brucella abortus RB51. Infection and Immunity. 2001, 69(9): 5502-5508. PMID: 11500423.

Ramesh Vemulapalli, Yongqun He, Larissa S. Buccolo, Stephen M. Boyle, Nammalwar Sriranganathan, Gerhardt G. Schurig. Complementation of Brucella abortus RB51 with a functional wboA gene results in O-antigen synthesis and enhanced vaccine efficacy but no change in its rough phenotype and attenuation. Infection and Immunity. 2000. 68(7): 3927-3932. PMID: 10858205.

Ramesh Vemulapalli, Yongqun He, Stephen M. Boyle, Nammalwar Sriranganathan, Gerhardt Schurig. Brucella abortus RB51 as a vector for heterologous protein expression and induction of specific Th-1 type immune responses in mice. Infection and Immunity. 2000. 68(6): 3290-3296. PMID: 10816476.

Ramesh Vemulapalli, Yongqun He, Silvio Cravero, Nammalwar Sriranganathan, Stephen M. Boyle, Gerhardt G. Schurig. Overexpression of protective antigen as a novel approach to enhance vaccine efficacy of Brucella abortus strain RB51. Infection and Immunity. 2000. 68(6): 3286-3289. PMID: 10816475.

Yongqun He, Zhongzhi Zhang, Hanchun Yang. Serological survey for reticuloendotheliosis of chicken flocks in Beijing. Acta Veterinaria et Zootechnica Sinica (i.e., Chinese Journal of Animal and Veterinary Sciences). 1998. 29 (1): 71-78.